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This review summarizes contemporary researches about the role of the resident immune cells in different organs – pineal gland, placenta, ovary, endometrium, liver, skin, gastro-intestinal tract, bronchial system. Mechanisms of the immune response realization reflects the relationship between different cells, tissues and organs, and thus support the notion of the unity of the nervous, immune and endocrine systems. It was established that the interaction of these systems is complex. Populations of various immune cells have common structural and functional features what is the foundation of a safety mechanism of the immune system. Reduction in the correlation of different subpopulations immune cells number in the organism is the foundation of various pathological processes.